Publications by Katerina J. Kechris

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REFEREED PUBLICATIONS

K. Kechris*, J. Yang* and R.-F. Yeh (2008). Prediction of Alternatively Skipped Exons and Splicing Enhancers from Exon Junction Arrays. (Submitted) (* these authors contributed equally)

W. Hu, L. Saba, K. Kechris, S. Bhave, P. Hoffman and B. Tabakoff (2008). Genomic insights into acute alcohol tolerance. Journal of Pharmacology And Experimental Therapeutics, 326: 792-800. [PubMed]

B. Tabakoff, L. Saba, K. Kechris, W. Hu, S. Bhave, D. Finn, N. Grahame, P. Hoffman (2008). The genomic determinants of alcohol preference in mice. Mammalian Genome , 19:352-65. [PubMed]

S. Bhave, C. Hornbaker, T. Phang, L. Saba, R. Lapadat, K. Kechris, J. Gaydos, D. McGoldrick, A. Dolbey, S. Leach, B. Soriano, A. Ellington, E. Ellington, K. Jones, J. Mangion, J. Belknap, R. Williams, L. Hunter, P. Hoffman and B. Tabakoff (2007). The PhenoGen informatics website: Tools for analyses of complex traits. BMC Genetics 8:59. [PubMed]

C. Washenberger, J. Han, K. Kechris, B. Jha, R. Silverman and D. Barton (2007). Hepatitis C virus RNA: Dinucleotide frequencies and cleavage by RNase L. Virus Research 130:85-95. [PubMed]

H. Kim, K. Kechris and L. Hunter (2007). Mining discriminative distance context of transcription factor binding sites on ChIP enriched regions. Lecture Notes in Computer Science: International Symposium on Bioinformatics Research and Applications, ISBRA 2007 Proceedings, pg 338-349.

K. Kechris, J. Lin, P. Bickel and A. Glazer (2006). Quantitative exploration of the occurrence of lateral gene transfer by using nitrogen fixation genes as a case study. Proceedings of the National Academy of Sciences, USA, 103:9584-9589. [PubMed] [Errata]

A. Klebes, A. Sustar, K. Kechris, H. Li, G. Schubiger and T. Kornberg (2005). Regulation of cellular plasticity in Drosophila imaginal disc cells by the Polycomb group, trithorax group and lama genes. Development, 132:3753-3765. [PubMed]

E. van Zwet, K. Kechris, P. Bickel and M. Eisen (2005). Estimating motifs under order restrictions. Statistical Applications in Genetics and Molecular Biology, Vol. 4: No. 1, Article 1. [PubMed]

K. Kechris, E. van Zwet, P. Bickel and M. Eisen (2004). Detecting DNA regulatory motifs by incorporating positional trends in information content. Genome Biology, 5:R50. [PubMed]

P. Bickel, K. Kechris, P. Spector, G. Wedemayer and A. Glazer (2002). Finding “important” sites in proteins. Proceedings of the National Academy of Sciences, USA, 99:14764-14771. [PubMed]