Software by Katerina J. Kechris

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  • TFEM [Download] (ANSI C code: K. Kechris, M. Richards, E. van Zwet)

    Transcription Factor Expectation Maximization: an algorithm for detecting DNA regulatory motifs by incorporating positional trends in information content. see Kechris et al., 2004

  • OR-MEME [Download] (ANSI C code: E. van Zwet, M. Richards, K. Kechris)

    Order Restricted MEME: an algorithm for detecting DNA regulatory motifs by constraining the order of information content. see van Zwet et al., 2005